説明
The objective of this dataset is to compile the historic records of marine and brackish diatom current species and genera reported for French coastal areas since the last quarter of the 19th century. The main focus is marine benthic diatoms, as occurrence datasets for phytoplankton (REPHY dataset) and for freshwater benthic diatoms (SEEE-Diatomées dataset) already exist for French coastal and inland waters, respectively. The dataset aims to fill this gap in knowledge by compiling reports that have been more difficult to reach (e.g., books, PhD theses and other grey literature), but also published papers on microphytobenthos research. The current version of the dataset has 11511 taxonomic entries found in 49 different references, dating from 1888 to 2019. A total of 2846 different taxa were compiled, 97% to species level or below, 3% to genus level. The dataset also offers information on geographic locations at 4 different levels, namely: site, county (i.e., département), region and seaboard. It also provides data on ecology (e.g., sampled substrate, habitat, growth forms) for most taxa. Moreover, a linkage to DiatomBase and WoRMS is given via AphiaID, their unique numerical database identifier. This linkage added relevant information for each species, such as higher taxonomic ranks or its accepted valid synonym.
データ レコード
この オカレンス（観察データと標本) リソース内のデータは、1 つまたは複数のデータ テーブルとして生物多様性データを共有するための標準化された形式であるダーウィン コア アーカイブ (DwC-A) として公開されています。 コア データ テーブルには、11,511 レコードが含まれています。
この IPT はデータをアーカイブし、データ リポジトリとして機能します。データとリソースのメタデータは、 ダウンロード セクションからダウンロードできます。 バージョン テーブルから公開可能な他のバージョンを閲覧でき、リソースに加えられた変更を知ることができます。
バージョン
次の表は、公にアクセス可能な公開バージョンのリソースのみ表示しています。
引用方法
研究者はこの研究内容を以下のように引用する必要があります。:
Ribeiro L, Figueira R, Oiry S, Buchet R, Sabbe K, Barillé L (2022): Benthic marine diatoms from French coastal and transitional waters. v1.3. No organisation. Dataset/Occurrence. http://ipt.gbif.pt/ipt/resource?r=benthic-marine-diatoms&v=1.3
権利
研究者は権利に関する下記ステートメントを尊重する必要があります。:
パブリッシャーとライセンス保持者権利者は Université de Nantes。 This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.
GBIF登録
このリソースをはGBIF と登録されており GBIF UUID: 64a375e9-aa8a-4727-9ea2-a548d33d903bが割り当てられています。 GBIF France によって承認されたデータ パブリッシャーとして GBIF に登録されているUniversité de Nantes が、このリソースをパブリッシュしました。
キーワード
Bacillariophyceae; Diatoms; Benthic; Marine and Coastal waters; France; Occurrence
連絡先
- メタデータ提供者 ●
- 最初のデータ採集者 ●
- 連絡先
http://orcid.org/0000-0002-6585-0140
- 最初のデータ採集者
- 最初のデータ採集者
- 最初のデータ採集者
- 最初のデータ採集者 ●
- 連絡先
地理的範囲
metropolitan France
| 座標（緯度経度） | 南 西 [-90, -180], 北 東 [90, 180] |
|---|
生物分類学的範囲
Diatoms (Bacillariophyceae) are listed to genus or species level. Nomenclature follows DiatomBase and higher classification is according to Cox (2015).
| Class | Bacillariophyceae (Diatoms) |
|---|
時間的範囲
| 開始日 / 終了日 | 1888-01-01 / 2019-10-31 |
|---|
プロジェクトデータ
説明がありません
| タイトル | Étude de la pertinence des peuplements du microphytobenthos estuarien pour la mise en place d’un bio-indicateur de la qualité des eaux de transition |
|---|---|
| ファンデイング | This research was funded by a grant by the L’Agence Française pour la Biodiversité, AFB grant number 180906 − Convention Microphytobenthos Phase II, and had the financial support of the Fundação para a Ciência e a Tecnologia (FCT) through UID/MAR/04292/2020. |
プロジェクトに携わる要員:
- 論文著者
収集方法
Data inventory and compilation: Data sources were identified based on literature research and web-based search engines (e.g., Google or Web of Science). Both English and French languages were used when entering key terms during the search process, which included terms such as “diatoms” or “microphytobenthos” and was limited geographically to metropolitan France. The applicable data sources were digitally available in pdf format or in paper. Relevant information was manually transferred to a standard format in MS Excel.
| Study Extent | Compilation of the historic records of marine and brackish diatom current species and genera reported for French coastal areas since the last quarter of the 19th century. |
|---|---|
| Quality Control | Each taxonomic entry is unique, as it refers to a single taxonomic unit found in each one of the 49 references used in the dataset and reported for a specific location (at one to four geographical levels). A thorough cross-checking of species names and clean-up of duplicates was made. In order to standardize the taxonomic entries, the nomenclatural format of the taxa found in the original sources was adapted to the one used in DiatomBase and the World Register of Marine Species (WoRMS), thanks to the taxon match option available on the website of the latter (www.marinespecies.org). DiatomBase (Kociolek et al. 2022) is primarily a nomenclatural database that updated and extended the Catalogue of Diatom Names (Fourtanier and Kociolek 2011), but it is also an authoritative open-access reference system for diatom taxa, which is universally recognized, and it is edited by 23 taxonomic editors world-wide. It is managed by VLIZ and shares with WoRMS a unique identifier, known as the AphiaID, for every species name. This identifier enables to link the species name to an internationally accepted standardized name and associated taxonomic information, such as accepted names, synonyms and current classification. The linkage of the current dataset to DiatomBase/WoRMS was made through a “worms” R package (version 0.2.2, J. Holstein 2018) that allows to retrieve the taxonomic information available for each AphiaID. The dataset was adjusted to the Darwin Core specifications (Wieczorek et al. 2012) in order to be published in the GBIF network. |
Method step description:
- NA
書誌情報の引用
- Cox, E. (2015). "Diatoms, Diatomeae (Bacillariophyceae s.l., Bacillariophyta)," in Syllabus of Plant Families. Adolf Engler’s Syllabus of Plant Families, ed. W. Frey. 13 ed (Stuttgart: Borntraeger), 64–103.
- Fourtanier, E. & Kociolek, J.P. (2011). Catalogue of Diatom Names, California Academy of Sciences, On-line Version updated18 September 2011. Available online at http://researcharchive.calacademy.org/research/diatoms/names/index.asp
- Holstein J., (2018). worms: Retrieving Aphia Information from World Register of Marine Species. R package version 0.2.2. https://CRAN.R-project.org/package=worms
- Kociolek, J.P.; Blanco, S.; Coste, M.; Ector, L.; Liu, Y.; Karthick, B.; Kulikovskiy, M.; Lundholm, N.; Ludwig, T.; Potapova, M.; Rimet, F.; Sabbe, K.; Sala, S.; Sar, E.; Taylor, J.; Van de Vijver, B.; Wetzel, C.E.; Williams, D.M.; Witkowski, A. & Witkowski, J. (2022). DiatomBase. Accessed at http://www.diatombase.org on 2022-01-03. https://doi.org/10.14284/504
- Wieczorek, J.; Bloom, D.; Guralnick, R.; Blum, S.; Döring, M.; Giovanni, R.; Robertson, T. & Vieglais D. (2012) Darwin Core: An evolving community-developed biodiversity data standard. PLOS One 7: e29715. https://doi.org/10.1371/journal.pone.0029715 https://doi.org/10.1371/journal.pone.0029715
追加のメタデータ
| 代替識別子 | 64a375e9-aa8a-4727-9ea2-a548d33d903b |
|---|---|
| http://ipt.gbif.fr/resource?r=benthic-marine-diatoms |