688ff587-af92-4f7b-82b5-3ee565afa025
https://ipt.gbif.fr/resource?r=small_terrestrial_mammals_along_a_gradient_of_forest_anthropisation_france
Small terrestrial mammals (Rodentia, Soricomorpha) along a gradient of forest anthropisation (reserves, manages forests, urban parks) in France
Nathalie
Charbonnel
INRAE-CBGP : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement - Centre de Biologie pour la gestion des Populations
Senior researcher (DR2, INRAE)
Av. Agropolis
Montferrier sur Lez
Hérault
34988
FR
+4 99 62 33 02
nathalie.charbonnel@inrae.fr
0000-0002-7907-6539
Julien
Pradel
INRAE-CBGP : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement - Centre de Biologie pour la gestion des Populations
Technician (TR, INRAE)
Av. Agropolis
Montferrier sur Lez
Hérault
34988
FR
+4 99 62 33 02
julien.pradel@inrae.fr
0000-0002-5438-6047
Marie
Bouilloud
CBGP, MIVEGEC, IRD, CNRS, University of Montpellier, Montpellier
PhD IRD
+4 99 62 33 02
marie.bouilloud@ird.fr
0000-0001-8740-3205
Anne
Loiseau
INRAE-CBGP : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement - Centre de Biologie pour la gestion des Populations
Technician
FR
anne.loiseau@inrae.fr
0000-0003-0394-6814
Sylvain
Piry
INRAE-CBGP : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement - Centre de Biologie pour la gestion des Populations
research engin
FR
sylvain.piry@inrae.fr
0000-0001-6981-5732
Maxime
Galan
INRAE-CBGP : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement - Centre de Biologie pour la gestion des Populations
research engineer
FR
maxime.galan@inrae.fr
0000-0001-6981-5732
Emmanuelle
Artige
INRAE-CBGP : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement - Centre de Biologie pour la gestion des Populations
engineer
FR
emmanuelle.artige@inrae.fr
0000-0001-5088-2038
Guillaume
Castel
INRAE-CBGP : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement - Centre de Biologie pour la gestion des Populations
researcher
FR
guillaume.castel@inrae.fr
0000-0003-2989-3087
Julien
Ferrero
INRAE-CBGP : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement - Centre de Biologie pour la gestion des Populations
master student
FR
julien.ferrero@ens-lyon.fr
Anaïs
Bordes
INRAE-CBGP : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement - Centre de Biologie pour la gestion des Populations
engineer
FR
Romain
Gallet
INRAE-CBGP : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement - Centre de Biologie pour la gestion des Populations
researcher
FR
romain.gallet@inrae.fr
0000-0002-7419-7403
Nathalie
Vieira
INRAE-CBGP : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement - Centre de Biologie pour la gestion des Populations
technician
FR
nathalie.vieira@inrae.fr
Geoffrey
Thuel
INRAE-CBGP : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement - Centre de Biologie pour la gestion des Populations
technician
FR
geoffrey.thuel@inrae.fr
Julien
Pradel
INRAE-CBGP : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement - Centre de Biologie pour la gestion des Populations
Technician
Montferrier sur Lez
Herault
FR
julien.pradel@inrae.fr
0000-0002-5438-6047
Nathalie
Charbonnel
INRAE-CBGP : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement - Centre de Biologie pour la gestion des Populations
Senior researcher
Montferrier sur Lez
FR
nathalie.charbonnel@inrae.fr
0000-0002-7907-6539
2022-09-20
eng
The dataset contains occurrences of small terrestrial mammals (Rodentia and Soricomorpha) trapped in forested areas in Eastern France (administrative departments: Rhône, Ain, Jura). The sampling sites correspond to different degrees of anthropisation. Forests included in biological reserves are the less anthropized sites, then public forests and urban parks experience higher levels of anthropisation.
Data were collected during spring and autumn 2020 (three to four sampling sites), 2021 (six sampling sites) and 2022 (four sampling sites). These variations in the number of sites between years were due to lockdown restrictions in 2020, or to the legal authorization to trap around biological reserves granted in 2021 only.
The capture of animals was carried out in various types of forests (pine, deciduous, mixed), and in different habitats within urban parks (wooded areas, buildings, hay storage yards, riverside vegetation, restaurants, playground for kids, botanical garden, landfills…). Captures were realised using live traps that were set on the ground for one to 11 nights.
During this study period, 1593 small mammals were trapped and identified. They belong to 15 species, among which there are nine species of rodents (Muridae, Cricetidae, Gliridae) and six species of shrews (Soricidae). They were weighted (gram) and measured (cm): both body length and tail length. Sexual characteristics were also recorded.
This dataset aims to better understand the relationship between small terrestrial mammal biodiversity and health in the context of global change, and in particular of forest anthropisation. It is part of the European Biodiversa BioRodDis project (https://www6.inrae.fr/biodiversa-bioroddis). Here we present the data gathered in France. The dataset will enable to describe the diversity of small terrestrial mammal communities in forested areas corresponding to different levels of anthropisation, and to evaluate the variability of this diversity over time, between seasons and between years.
Occurrence
GBIF Dataset Type Vocabulary: http://rs.gbif.org/vocabulary/gbif/dataset_type_2015-07-10.xml
Specimen
GBIF Dataset Subtype Vocabulary: http://rs.gbif.org/vocabulary/gbif/dataset_subtype.xml
This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License.
The data were collected in six forested areas in Eastern France, within three administrative departments (Rhône, Ain, Jura).
2.021
7.734
48.633
44.84
2020-02-25
2022-06-03
Reign
Animalia
Class
Mammalia
Order
Rodentia Soricomorpha
Family
Cricetidae Muridae Gliridae Soricidae
Genus
Apodemus, Crocidura, Glis, Microtus, Mus, Myodes, Neomys, Rattus, Sorex,
Species
Apodemus flavicollis
Apodemus sylvaticus
Crocidura russula
Crocidura leucodon
Glis glis
Microtus agrestis
Microtus arvalis
Microtus subterraneus
Mus musculus
Myodes glareolus
Neomys fodiens
Rattus norvegicus
Sorex araneus
Sorex coronatus
Sorex minutus
species
Apodemus flavicollis
species
Apodemus sylvaticus
species
Crocidura russula
species
Crocidura leucodon
species
Glis glis
species
Microtus agrestis
species
Microtus subterraneus
species
Mus musculus
species
Myodes glareolus
species
Neomys fodiens
species
Rattus norvegicus
species
Sorex araneus
species
Sorex coronatus
species
Sorex minutus
unkown
Nathalie
Charbonnel
INRAE-CBGP : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement - Centre de Biologie pour la gestion des Populations
Senior researcher (DR2, INRAE)
Av. Agropolis
Montferrier sur Lez
Hérault
34988
FR
+4 99 62 33 02
nathalie.charbonnel@inrae.fr
0000-0002-7907-6539
Julien
Pradel
INRAE-CBGP : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement - Centre de Biologie pour la gestion des Populations
Technician (TR, INRAE)
Av. Agropolis
Montferrier sur Lez
Hérault
34988
FR
+4 99 62 33 02
julien.pradel@inrae.fr
0000-0002-5438-6047
NA
6 sample sites (2 forest reserves, 2 public forests, 2 urban parks) in Eastern France. Current dataset extends from February 2020 to June 2022
Small mammals were live trapped. Six to ten lines of 20 live-traps (INRA) with about 3 m interval were set up so that each sampling site consisted of a few km2 area. Traps were baited with sunflower seeds, carrots and sardine. Each trap was geolocated. The traps were checked daily and early in the morning. Trapping session per site lasted at least three nights, except when abundances were too low and new trap lines had to be set up. As trapping rats and mice in urban parks was difficult, traps were set in particular places where animals had been detected, and they were removed after 10 or 11 nights.
All captured animals were determined to species level using morphological criteria in the field, or using molecular methods when necessary (CO1 sequencing for Microtus species and shrews, Hebert et al. 2003, or DNA fingerprinting for Apodemus species, Bugarski-Stanojevic et al. 2012). Animal dissections and measurements were performed according to the protocols described in Herbreteau et al. (2011). Capture data are registered in the CBGP small mammal database (BPM, http://bpm-cbgp.science); associated biological samples (organs, blood, parasites ...) are included in the CBGP reference collection of small mammals doi:10.15454/WWNUPO.
Managing BIOdiversity in forests and urban green spaces : Dilution and amplification effects on RODent microbiomes and rodent-borne DISeases
Charbonnel
Nathalie
0000-0002-7907-6539
principalInvestigator
This dataset was funded through the 2018-2019 BiodivERsA joint call for research proposals, under the BiodivERsA3 ERA-Net COFUND programme, and with the funding organisations ANR (France).
BioRodDis includes occurrence of small terrestrial mammals from forests and urban parks in five countries: Belgium, France, Germany, Ireland and Poland.
BioRodDis project aims at elucidating the interlinkages between small mammal biodiversity and diseases at local and European scales using standardized assessments of biodiversity and disease risks. In particular, the dilution/amplification effect is assessed by integrating new key research directions, i.e. host microbiome and multiple pathogen diversity levels on one hand, seasonal and multi-annual dynamics on the other hand, including climate change scenarios, and interactions with socioeconomic contexts.
2022-07-11T15:04:09.854+00:00
dataset
Charbonnel N, Pradel J, Bouilloud M, Loiseau A, Piry S, Galan M, Artige E, Castel G, Ferrero J, Bordes A, Gallet R, Vieira N, Thuel G (2022): Small terrestrial mammals (Rodentia, Soricomorpha) along a gradient of forest anthropisation (reserves, manages forests, urban parks) in France. v1.5. CBGP (UMR INRA, Cirad, IRD, Montpellier SupAgro). Dataset/Occurrence. https://ipt.gbif.fr/resource?r=small_terrestrial_mammals_along_a_gradient_of_forest_anthropisation_france&v=1.5
Bugarski-Stanojević V, Blagojević J, Adnadević T, Jovanović V, Vujošević M (2013) Identification of the sibling species Apodemus sylvaticus and Apodemus flavicollis (Rodentia, Muridae)—Comparison of molecular methods. Journal of Comparative Zoology 252: 579-587.
Hebert PDN, Cywinska A, Ball SL, deWaard JR (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society B: Biological Sciences 270: 313–321.
doi:10.15454/WWNUPO
CBGP small mammal database (BPM, http://bpm-cbgp.science)
688ff587-af92-4f7b-82b5-3ee565afa025/v1.5.xml