說明
The objective of this dataset is to compile the historic records of marine and brackish diatom current species and genera reported for French coastal areas since the last quarter of the 19th century. The main focus is marine benthic diatoms, as occurrence datasets for phytoplankton (REPHY dataset) and for freshwater benthic diatoms (SEEE-Diatomées dataset) already exist for French coastal and inland waters, respectively. The dataset aims to fill this gap in knowledge by compiling reports that have been more difficult to reach (e.g., books, PhD theses and other grey literature), but also published papers on microphytobenthos research. The current version of the dataset has 11511 taxonomic entries found in 49 different references, dating from 1888 to 2019. A total of 2846 different taxa were compiled, 97% to species level or below, 3% to genus level. The dataset also offers information on geographic locations at 4 different levels, namely: site, county (i.e., département), region and seaboard. It also provides data on ecology (e.g., sampled substrate, habitat, growth forms) for most taxa. Moreover, a linkage to DiatomBase and WoRMS is given via AphiaID, their unique numerical database identifier. This linkage added relevant information for each species, such as higher taxonomic ranks or its accepted valid synonym.
資料紀錄
此資源出現紀錄的資料已發佈為達爾文核心集檔案（DwC-A），其以一或多組資料表構成分享生物多樣性資料的標準格式。 核心資料表包含 11,511 筆紀錄。
此 IPT 存放資料以提供資料儲存庫服務。資料與資源的詮釋資料可由「下載」單元下載。「版本」表格列出此資源的其它公開版本，以便利追蹤其隨時間的變更。
版本
以下的表格只顯示可公開存取資源的已發布版本。
如何引用
研究者應依照以下指示引用此資源。:
Ribeiro L, Figueira R, Oiry S, Buchet R, Sabbe K, Barillé L (2022): Benthic marine diatoms from French coastal and transitional waters. v1.3. No organisation. Dataset/Occurrence. http://ipt.gbif.pt/ipt/resource?r=benthic-marine-diatoms&v=1.3
權利
研究者應尊重以下權利聲明。:
此資料的發布者及權利單位為 Université de Nantes。 This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.
GBIF 註冊
此資源已向GBIF註冊，並指定以下之GBIF UUID: 64a375e9-aa8a-4727-9ea2-a548d33d903b。 Université de Nantes 發佈此資源，並經由GBIF France同意向GBIF註冊成為資料發佈者。
關鍵字
Bacillariophyceae; Diatoms; Benthic; Marine and Coastal waters; France; Occurrence
聯絡資訊
- 元數據提供者 ●
- 出處 ●
- 連絡人
http://orcid.org/0000-0002-6585-0140
- 出處
- 出處
- 出處
- 出處 ●
- 連絡人
地理涵蓋範圍
metropolitan France
| 界定座標範圍 | 緯度南界 經度西界 [-90, -180], 緯度北界 經度東界 [90, 180] |
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分類群涵蓋範圍
Diatoms (Bacillariophyceae) are listed to genus or species level. Nomenclature follows DiatomBase and higher classification is according to Cox (2015).
| Class | Bacillariophyceae (Diatoms) |
|---|
時間涵蓋範圍
| 起始日期 / 結束日期 | 1888-01-01 / 2019-10-31 |
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計畫資料
無相關描述
| 計畫名稱 | Étude de la pertinence des peuplements du microphytobenthos estuarien pour la mise en place d’un bio-indicateur de la qualité des eaux de transition |
|---|---|
| 經費來源 | This research was funded by a grant by the L’Agence Française pour la Biodiversité, AFB grant number 180906 − Convention Microphytobenthos Phase II, and had the financial support of the Fundação para a Ciência e a Tecnologia (FCT) through UID/MAR/04292/2020. |
參與計畫的人員:
- 作者
取樣方法
Data inventory and compilation: Data sources were identified based on literature research and web-based search engines (e.g., Google or Web of Science). Both English and French languages were used when entering key terms during the search process, which included terms such as “diatoms” or “microphytobenthos” and was limited geographically to metropolitan France. The applicable data sources were digitally available in pdf format or in paper. Relevant information was manually transferred to a standard format in MS Excel.
| 研究範圍 | Compilation of the historic records of marine and brackish diatom current species and genera reported for French coastal areas since the last quarter of the 19th century. |
|---|---|
| 品質控管 | Each taxonomic entry is unique, as it refers to a single taxonomic unit found in each one of the 49 references used in the dataset and reported for a specific location (at one to four geographical levels). A thorough cross-checking of species names and clean-up of duplicates was made. In order to standardize the taxonomic entries, the nomenclatural format of the taxa found in the original sources was adapted to the one used in DiatomBase and the World Register of Marine Species (WoRMS), thanks to the taxon match option available on the website of the latter (www.marinespecies.org). DiatomBase (Kociolek et al. 2022) is primarily a nomenclatural database that updated and extended the Catalogue of Diatom Names (Fourtanier and Kociolek 2011), but it is also an authoritative open-access reference system for diatom taxa, which is universally recognized, and it is edited by 23 taxonomic editors world-wide. It is managed by VLIZ and shares with WoRMS a unique identifier, known as the AphiaID, for every species name. This identifier enables to link the species name to an internationally accepted standardized name and associated taxonomic information, such as accepted names, synonyms and current classification. The linkage of the current dataset to DiatomBase/WoRMS was made through a “worms” R package (version 0.2.2, J. Holstein 2018) that allows to retrieve the taxonomic information available for each AphiaID. The dataset was adjusted to the Darwin Core specifications (Wieczorek et al. 2012) in order to be published in the GBIF network. |
方法步驟描述:
- NA
引用文獻
- Cox, E. (2015). "Diatoms, Diatomeae (Bacillariophyceae s.l., Bacillariophyta)," in Syllabus of Plant Families. Adolf Engler’s Syllabus of Plant Families, ed. W. Frey. 13 ed (Stuttgart: Borntraeger), 64–103.
- Fourtanier, E. & Kociolek, J.P. (2011). Catalogue of Diatom Names, California Academy of Sciences, On-line Version updated18 September 2011. Available online at http://researcharchive.calacademy.org/research/diatoms/names/index.asp
- Holstein J., (2018). worms: Retrieving Aphia Information from World Register of Marine Species. R package version 0.2.2. https://CRAN.R-project.org/package=worms
- Kociolek, J.P.; Blanco, S.; Coste, M.; Ector, L.; Liu, Y.; Karthick, B.; Kulikovskiy, M.; Lundholm, N.; Ludwig, T.; Potapova, M.; Rimet, F.; Sabbe, K.; Sala, S.; Sar, E.; Taylor, J.; Van de Vijver, B.; Wetzel, C.E.; Williams, D.M.; Witkowski, A. & Witkowski, J. (2022). DiatomBase. Accessed at http://www.diatombase.org on 2022-01-03. https://doi.org/10.14284/504
- Wieczorek, J.; Bloom, D.; Guralnick, R.; Blum, S.; Döring, M.; Giovanni, R.; Robertson, T. & Vieglais D. (2012) Darwin Core: An evolving community-developed biodiversity data standard. PLOS One 7: e29715. https://doi.org/10.1371/journal.pone.0029715 https://doi.org/10.1371/journal.pone.0029715
額外的詮釋資料
| 替代的識別碼 | 64a375e9-aa8a-4727-9ea2-a548d33d903b |
|---|---|
| http://ipt.gbif.fr/resource?r=benthic-marine-diatoms |