For many years now, within the framework of ORE DiaPFC, SOERE OLA or the OFB-INRAE-Institut Agro-UPPA Cluster, various INRAE units (U3E, UMR ECOBIOP and UMR CARRTEL) and OFB (DRAS ) take samples from many aquatic specimens. These samples, usually scales or fins, are then used by the scientific community to carry out various analyzes and research. Labeled Biological Resource Center (CRB) by the GIS IBISA, Colisa is part of the BRC4Env environment pillar of the RARE infrastructure. Our catalog references these different hard tissue samples and offers a module allowing you to perform queries on our database and select the types of data likely to interest you. You can then export this data.
The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 323,752 records.
6 extension data tables also exist. An extension record supplies extra information about a core record. The number of records in each extension data table is illustrated below.
This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.
The table below shows only published versions of the resource that are publicly accessible.
How to cite
Researchers should cite this work as follows:
Marchand F, Azam D, Lange F, Josset Q, Jeannot N, Goulon C, Guéraud F (2023): Fish sample collection. v1.1. GBIF France. Dataset/Occurrence. https://ipt.gbif.fr/resource?r=colisa&v=1.1
Researchers should respect the following rights statement:
The publisher and rights holder of this work is Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE). This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License.
This resource has been registered with GBIF, and assigned the following GBIF UUID: 072fb9cc-b309-40e9-8b66-ffad4753a778. Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE) publishes this resource, and is itself registered in GBIF as a data publisher endorsed by GBIF France.
Occurrence;ichthyological sample;Genetic Resource
- Metadata Provider ●
- Originator ●
- Point Of Contact
The samples come mainly from France (metropolitan and Kerguelen Islands)
|Bounding Coordinates||South West [-90, -180], North East [90, 180]|
Model species, preferentially used by the scientific community to study biological mechanisms whose results can be extended to other less accessible or less documented species based on the conservation of functions and genes during evolution.
|Species||Salmo salar (Atlantic Salmon), Salmo trutta (Sea trout), Onchorynchus mykiss (Rainbow Trout), Cyprinus carpio (Common carp, European carp, King carp, Mirror carp), Sparus auratus (Gilthead seabream)|
|Start Date / End Date||1958-12-18 / 2023-01-15|
The samples come from scientific monitoring and from amateur and professional fishing.
|Study Extent||French metropole and Kerguelen island|
|Quality Control||The Colisa Biological Resource Centre is ISO 90001 certified|
Method step description:
- - Samples of scales or other tissues are taken from fish during fish surveys. The fish are returned to the water. Otoliths are collected from fish found dead or caught by amateur fishermen. - Age is verified from scale reading according to standard methods described by Baglinière and Le Louarn (1987) and Richard and Baglinière (1990).