說明
The dataset contains occurrences of small terrestrial mammals (Rodentia and Soricomorpha) trapped in forested areas in Eastern France (administrative departments: Rhône, Ain, Jura). The sampling sites correspond to different degrees of anthropisation. Forests included in biological reserves are the less anthropized sites, then public forests and urban parks experience higher levels of anthropisation. Data were collected during spring and autumn 2020 (three to four sampling sites), 2021 (six sampling sites) and 2022 (four sampling sites). These variations in the number of sites between years were due to lockdown restrictions in 2020, or to the legal authorization to trap around biological reserves granted in 2021 only. The capture of animals was carried out in various types of forests (pine, deciduous, mixed), and in different habitats within urban parks (wooded areas, buildings, hay storage yards, riverside vegetation, restaurants, playground for kids, botanical garden, landfills…). Captures were realised using live traps that were set on the ground for one to 11 nights. During this study period, 1593 small mammals were trapped and identified. They belong to 15 species, among which there are nine species of rodents (Muridae, Cricetidae, Gliridae) and six species of shrews (Soricidae). They were weighted (gram) and measured (cm): both body length and tail length. Sexual characteristics were also recorded. This dataset aims to better understand the relationship between small terrestrial mammal biodiversity and health in the context of global change, and in particular of forest anthropisation. It is part of the European Biodiversa BioRodDis project (https://www6.inrae.fr/biodiversa-bioroddis). Here we present the data gathered in France. The dataset will enable to describe the diversity of small terrestrial mammal communities in forested areas corresponding to different levels of anthropisation, and to evaluate the variability of this diversity over time, between seasons and between years.
資料紀錄
此資源出現紀錄的資料已發佈為達爾文核心集檔案（DwC-A），其以一或多組資料表構成分享生物多樣性資料的標準格式。 核心資料表包含 1,593 筆紀錄。
亦存在 1 筆延伸集的資料表。延伸集中的紀錄補充核心集中紀錄的額外資訊。 每個延伸集資料表中資料筆數顯示如下。
此 IPT 存放資料以提供資料儲存庫服務。資料與資源的詮釋資料可由「下載」單元下載。「版本」表格列出此資源的其它公開版本，以便利追蹤其隨時間的變更。
版本
以下的表格只顯示可公開存取資源的已發布版本。
如何引用
研究者應依照以下指示引用此資源。:
Charbonnel N, Pradel J, Bouilloud M, Loiseau A, Piry S, Galan M, Artige E, Castel G, Ferrero J, Bordes A, Gallet R, Vieira N, Thuel G (2022): Small terrestrial mammals (Rodentia, Soricomorpha) along a gradient of forest anthropisation (reserves, manages forests, urban parks) in France. v1.5. CBGP (UMR INRA, Cirad, IRD, Montpellier SupAgro). Dataset/Occurrence. https://ipt.gbif.fr/resource?r=small_terrestrial_mammals_along_a_gradient_of_forest_anthropisation_france&v=1.5
權利
研究者應尊重以下權利聲明。:
此資料的發布者及權利單位為 CBGP (UMR INRAE, Cirad, IRD, Institut Agro | Montpellier)。 This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.
GBIF 註冊
此資源已向GBIF註冊，並指定以下之GBIF UUID: 688ff587-af92-4f7b-82b5-3ee565afa025。 CBGP (UMR INRAE, Cirad, IRD, Institut Agro | Montpellier) 發佈此資源，並經由GBIF France同意向GBIF註冊成為資料發佈者。
關鍵字
Occurrence; Specimen
聯絡資訊
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http://orcid.org/0000-0002-7907-6539
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地理涵蓋範圍
The data were collected in six forested areas in Eastern France, within three administrative departments (Rhône, Ain, Jura).
| 界定座標範圍 | 緯度南界 經度西界 [44.84, 2.021], 緯度北界 經度東界 [48.633, 7.734] |
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分類群涵蓋範圍
Reign Animalia Class Mammalia Order Rodentia Soricomorpha Family Cricetidae Muridae Gliridae Soricidae Genus Apodemus, Crocidura, Glis, Microtus, Mus, Myodes, Neomys, Rattus, Sorex, Species Apodemus flavicollis Apodemus sylvaticus Crocidura russula Crocidura leucodon Glis glis Microtus agrestis Microtus arvalis Microtus subterraneus Mus musculus Myodes glareolus Neomys fodiens Rattus norvegicus Sorex araneus Sorex coronatus Sorex minutus
| Species | Apodemus flavicollis, Apodemus sylvaticus, Crocidura russula, Crocidura leucodon, Glis glis, Microtus agrestis, Microtus subterraneus, Mus musculus, Myodes glareolus, Neomys fodiens, Rattus norvegicus, Sorex araneus, Sorex coronatus, Sorex minutus |
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時間涵蓋範圍
| 起始日期 / 結束日期 | 2020-02-25 / 2022-06-03 |
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計畫資料
This dataset was funded through the 2018-2019 BiodivERsA joint call for research proposals, under the BiodivERsA3 ERA-Net COFUND programme, and with the funding organisations ANR (France).
| 計畫名稱 | Managing BIOdiversity in forests and urban green spaces : Dilution and amplification effects on RODent microbiomes and rodent-borne DISeases |
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| 辨識碼 | Biodiversa-BioRodDis |
| 研究區域描述 | BioRodDis includes occurrence of small terrestrial mammals from forests and urban parks in five countries: Belgium, France, Germany, Ireland and Poland. |
| 研究設計描述 | BioRodDis project aims at elucidating the interlinkages between small mammal biodiversity and diseases at local and European scales using standardized assessments of biodiversity and disease risks. In particular, the dilution/amplification effect is assessed by integrating new key research directions, i.e. host microbiome and multiple pathogen diversity levels on one hand, seasonal and multi-annual dynamics on the other hand, including climate change scenarios, and interactions with socioeconomic contexts. |
參與計畫的人員:
取樣方法
Small mammals were live trapped. Six to ten lines of 20 live-traps (INRA) with about 3 m interval were set up so that each sampling site consisted of a few km2 area. Traps were baited with sunflower seeds, carrots and sardine. Each trap was geolocated. The traps were checked daily and early in the morning. Trapping session per site lasted at least three nights, except when abundances were too low and new trap lines had to be set up. As trapping rats and mice in urban parks was difficult, traps were set in particular places where animals had been detected, and they were removed after 10 or 11 nights.
| 研究範圍 | 6 sample sites (2 forest reserves, 2 public forests, 2 urban parks) in Eastern France. Current dataset extends from February 2020 to June 2022 |
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| 品質控管 | All captured animals were determined to species level using morphological criteria in the field, or using molecular methods when necessary (CO1 sequencing for Microtus species and shrews, Hebert et al. 2003, or DNA fingerprinting for Apodemus species, Bugarski-Stanojevic et al. 2012). Animal dissections and measurements were performed according to the protocols described in Herbreteau et al. (2011). Capture data are registered in the CBGP small mammal database (BPM, http://bpm-cbgp.science); associated biological samples (organs, blood, parasites ...) are included in the CBGP reference collection of small mammals doi:10.15454/WWNUPO. |
方法步驟描述:
- NA
收藏資料
| 蒐藏名稱 | CBGP small mammal database (BPM, http://bpm-cbgp.science) |
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| 蒐藏編號 | doi:10.15454/WWNUPO |
引用文獻
- Bugarski-Stanojević V, Blagojević J, Adnadević T, Jovanović V, Vujošević M (2013) Identification of the sibling species Apodemus sylvaticus and Apodemus flavicollis (Rodentia, Muridae)—Comparison of molecular methods. Journal of Comparative Zoology 252: 579-587. 10.1016/j.jcz.2012.11.004
- Hebert PDN, Cywinska A, Ball SL, deWaard JR (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society B: Biological Sciences 270: 313–321. 10.1098/rspb.2002.2218
額外的詮釋資料
| 替代的識別碼 | 688ff587-af92-4f7b-82b5-3ee565afa025 |
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| https://ipt.gbif.fr/resource?r=small_terrestrial_mammals_along_a_gradient_of_forest_anthropisation_france |